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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Abcf3, ATP-binding cassette, sub-family F (GCN20), member 3
Sequence ID:NM_013852
Entrez Gene ID:27406
Ensembl ID:ENSMUSG00000003234

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16 A3|16 22.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 20559928 - 20560816

 Exon Info From UCSC:
NM_013852

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1430389Full LengthBC032923ATP-binding cassette, sub-family F (GCN20), member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038880  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013852 NP_038880 Q8K268 ABC_tran

Related Sequences

 
mRNAGenPeptSwissProt
AF213381 AAF31421 Q8K268
BC032923 AAH32923 Q8K268

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Abcf3 NP_038880 R.norvegicus Abcf3 287982   NP_001011896 98
H.sapiens ABCF3 55324 Gene Info NP_060828 97
A.gambiae AgaP_AGAP012005 1280669   XP_320530 58
D.melanogaster CG9330 40131   NP_649129 58
C.elegans abcf-3 175873   NP_498339 52
N.crassa NCU04051 3873837   XP_957666 49
S.pombe SPBC29A3.09c 2540597   NP_595837 47
S.cerevisiae GCN20 850561   NP_116664 47
A.thaliana GCN3 842763   NP_176636 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)