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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atad1, ATPase family, AAA domain containing 1
Sequence ID:NM_026487
Entrez Gene ID:67979
Ensembl ID:ENSMUSG00000013662

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19|19 C3

Chromosomal Position (from UCSC)

Chromosomal Position:19: 32674125 - 32698525

NM_026487 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
118023274705232748853
180319363275120632751339
193719873275849132758541
198820773276172232761811
207821843277028132770387
218523853277292932773129
238625063277600932776129
250726053277702932777127
260627803278132432781498
278128133278675532786787

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3593451Full LengthBC029085ATPase family, AAA domain containing 1
5708377Full LengthBC043051ATPase family, AAA domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080763  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_026487 NP_080763 Q9D5T0 EC 3.6.1.3 AAA

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC029085 AAH29085 Q9D5T0 EC 3.6.1.3
BC043051 AAH43051 Q9D5T0 EC 3.6.1.3
AK007147 BAB24872 Q9D9C1  
AK009419 BAB26274 Q9D5T0 EC 3.6.1.3
AK014967 BAB29643 Q9D5T0 EC 3.6.1.3
AK030719 BAC27097 Q9D5T0 EC 3.6.1.3
AK033639 BAC28402 Q9D5T0 EC 3.6.1.3
AK150469 BAE29586 Q9D5T0 EC 3.6.1.3
AK152059 BAE30915 Q9D5T0 EC 3.6.1.3
AK165953 BAE38481 Q9D5T0 EC 3.6.1.3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atad1 NP_080763 H.sapiens ATAD1 84896 Gene Info NP_116199 100
R.norvegicus Atad1 309532   NP_001030174 100
A.gambiae AgaP_AGAP009625 1279001   XP_318657 60
D.melanogaster nmd 44021   NP_609373 57
S.cerevisiae MSP1 852915   NP_011542 51
N.crassa NCU07988 3878797   XP_962658 51
A.thaliana AT4G27680 828882   NP_194498 46
S.pombe SPCC24B10.10c 2539116   NP_588013 45
A.thaliana AT5G53540 835436   NP_200166 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)