Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast)
Sequence ID:NM_026573
Entrez Gene ID:68134
Ensembl ID:ENSMUSG00000036572

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X|X A2

Chromosomal Position (from UCSC)

Chromosomal Position:X: 37099679 - 37110319

NM_026573 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18283463182834632655
82911293463551634635816
113012903463685234637012
129114733463950134639683
147415173464008734640130
151816283464202134642131
162917273464442334644521
172818343464890934649015
183519413464914234649248
194221883465007034650316

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40091025Full LengthBC117769UPF3 regulator of nonsense transcripts homolog B (yeast)
40091027Full LengthBC117770UPF3 regulator of nonsense transcripts homolog B (yeast)
5358431IncompleteBC047049UPF3 regulator of nonsense transcripts homolog B (yeast)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026573 NP_080849 Q3ULL6  

Related Sequences

 
mRNAGenPeptSwissProt
BC047049 AAH47049 Q80UI8
BC117769 AAI17770 Q149I6
BC117770 AAI17771 Q149I6
AK019989 BAB31954 Q9CS15
AK145431 BAE26432 Q3ULL6
AK162222 BAE36799 Q9CS15

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Upf3b NP_080849 R.norvegicus Upf3b 313449   NP_001129345 99
H.sapiens UPF3B 65109 Gene Info NP_542199 87
D.melanogaster Upf3 37792   NP_726375 37
A.gambiae AgaP_AGAP006649 1277233   XP_316679 33
A.thaliana UPF3 840295   NP_001117406 31
C.elegans smg-4 179371   NP_741600 29
S.pombe SPAC13G7.03 2542908   NP_593705 24

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)