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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Zmat5, Zinc finger, matrin type 5
Sequence ID:NM_026015
Entrez Gene ID:67178
Ensembl ID:ENSMUSG00000009076

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 A1|11 3.0

Chromosomal Position (from UCSC)

Chromosomal Position:11: 4704686 - 4737532

NM_026015 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14446046804604723
4519846223604622513
19926146285874628649
26234246301894630269
34345446320694632180
45578946373344637668

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4205598Full LengthBC031796zinc finger, matrin type 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080291  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026015 NP_080291 Q9CQR5 zf-CCCH
zf-U1

Related Sequences

 
mRNAGenPeptSwissProt
BC031796 AAH31796 Q9CQR5
AK003361 BAB22736 Q9CQR5
AK007565 BAB25111 Q9CQR5
AK012098 BAB28029 Q9CQR5
AK013415 BAB28843 Q9CQR5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Zmat5 NP_080291 H.sapiens ZMAT5 55954 Gene Info NP_001003692 93
R.norvegicus Zmat5 501926   XP_577351 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)