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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clcn7, chloride channel 7
Sequence ID:NM_011930
Entrez Gene ID:26373
Ensembl ID:ENSMUSG00000036636

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A3.3|17 10.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 25161040 - 25162098

 Exon Info From UCSC:
NM_011930

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5698121Full LengthBC050907chloride channel 7
5698121Full LengthBC053049chloride channel 7
6849205Full LengthBC054799chloride channel 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036060  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011930 NP_036060 O70496
Q6RUT9
CBS
Voltage_CLC

Related Sequences

 
mRNAGenPeptSwissProt
BC005749 AAH05749 Q99JQ6
BC050907 AAH50907 O70496
Q6RUT9
BC053049 AAH53049 O70496
Q6RUT9
BC054799 AAH54799 O70496
Q6RUT9
AK030444 BAC26967 O70496
Q6RUT9
AK032674 BAC27982 Q8CCI9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clcn7 NP_036060 R.norvegicus Clcn7 29233   NP_113756 100
H.sapiens CLCN7 1186 Gene Info NP_001278 97
A.gambiae AgaP_AGAP007499 1269729   XP_308378 53
D.melanogaster ClC-b 36381   NP_610798 52
C.elegans clh-6 179655   NP_506022 51
A.thaliana AT5G33280 833300   NP_198313 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)