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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Yipf5, Yip1 domain family, member 5
Sequence ID:NM_023311
Entrez Gene ID:67180
Ensembl ID:ENSMUSG00000024487

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18 B3|18

Chromosomal Position (from UCSC)

Chromosomal Position:18: 40206237 - 40218855

NM_023311 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
115364036451840366053
153717184036734040367521
171918644037040140370546
186520374037169640371868
203821574037839940378518
215823294037888140379052

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3155690Full LengthBC003317Yip1 domain family, member 5
6466806Full LengthBC055301Yip1 domain family, member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_075800  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_023311 NP_075800 Q9EQQ2 Yip1

Related Sequences

 
mRNAGenPeptSwissProt
AF140226 AAG48522 Q9EQQ2
BC003317 AAH03317 Q9EQQ2
BC055301 AAH55301 Q9EQQ2
AK010089 BAB26694 Q9EQQ2
AK151425 BAE30389 Q9EQQ2
AK151461 BAE30419 Q9EQQ2
AK152440 BAE31221 Q9EQQ2
AK153123 BAE31738 Q9EQQ2
AK160004 BAE35552 Q9EQQ2
AK167526 BAE39596 Q9EQQ2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Yipf5 NP_075800 R.norvegicus Yipf5 361315   NP_001014172 98
H.sapiens YIPF5 81555 Gene Info NP_110426 93
D.melanogaster CG12404 34696   NP_609596 55
C.elegans F32D8.14 179507   NP_001023875 48
S.pombe SPCC61.04c 2539076   NP_588195 46
S.cerevisiae YIP1 853082   NP_011688 44
N.crassa NCU05514 3876598   XP_960476 43
A.thaliana AT2G36300 818202   NP_565842 38
A.thaliana AT3G52760 824442   NP_190844 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)