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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col9a2, collagen, type IX, alpha 2
Sequence ID:NM_007741
Entrez Gene ID:12840
Ensembl ID:ENSMUSG00000028626

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D2.2|4 53.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 121039626 - 121055321

 Exon Info From UCSC:
NM_007741

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5355825Full LengthBC029697collagen, type IX, alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031767  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007741 NP_031767 Q07643 Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC029697 AAH29697 Q8K2W0
X63014 CAA44742 Q07643

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col9a2 NP_031767 R.norvegicus Col9a2 362584   NP_001102145 98
H.sapiens COL9A2 1298 Gene Info NP_001843 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)