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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cln3, Ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
Sequence ID:NM_001146311
NM_009907
Entrez Gene ID:12752
Ensembl ID:ENSMUSG00000030720

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F3|7 60.4

Chromosomal Position (from UCSC)

Chromosomal Position:7: 126571399 - 126583220

 Exon Info From UCSC:
NM_001146311
NM_009907

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3501036Full LengthBC047120ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
5250894Full LengthBC060306ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
5353776Full LengthBC080759ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
6477909Full LengthBC058753ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034037  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001146311 NP_001139783    
NM_009907 NP_034037 Q8C5B1
Q61124
CLN3

Related Sequences

 
mRNAGenPeptSwissProt
U68064 AAB07595 Q61124
U92811 AAB69983 Q61124
U47106 AAC52957 Q61124
BC047120 AAH47120 Q811D1
BC058753 AAH58753 Q61124
BC060306 AAH60306 Q6PAH4
BC080759 AAH80759 Q61124
AK078976 BAC37491 Q8C5B1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cln3 NP_034037 R.norvegicus Cln3 293485   NP_001006972 96
H.sapiens CLN3 1201 Gene Info NP_000077 86
C.elegans cln-3.2 172171   NP_491556 47
A.gambiae AgaP_AGAP003934 1278760   XP_318386 46
D.melanogaster cln3 39981   NP_649011 45
C.elegans cln-3.1 179559   NP_505859 44
N.crassa NCU08408 3879435   XP_963280 44
N.crassa NCU10272 5847217   XP_001728107 44
C.elegans cln-3.3 179249   NP_505237 43
S.cerevisiae YHC3 853387   NP_012476 40
S.pombe btn1 2543645   NP_593598 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)