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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vim, vimentin
Sequence ID:NM_011701
Entrez Gene ID:22352
Ensembl ID:ENSMUSG00000026728

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A2|2 7.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 13574806 - 13582818

NM_011701 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16841349593713496620
6857451349716713497227
7468411350003913500134
84210031350021513500376
100411291350104713501172
113013501350164413501864
135113941350226613502309
139514801350323913503324
148118341350409913504452

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6415629Full LengthBC089335vimentin
40135453IncompleteBC134386vimentin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035831  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011701 NP_035831 Q5FWJ3
P20152
Filament
Filament_head

Related Sequences

 
mRNAGenPeptSwissProt
M24849 AAA40555 P20152
M26251 AAA40556 Q5FWJ3
P20152
BC089335 AAH89335 Q5FWJ3
P20152
BC134386 AAI34387 A4IF59
AK033175 BAC28181 P20152
AK131618 BAE20723 Q3V2S4
AK133726 BAE21803 Q5FWJ3
P20152
AK150270 BAE29426 Q3UD36
AK151196 BAE30193 Q3UAX1
AK153019 BAE31653 Q3U6S1
AK159539 BAE35166 Q3TWV0
AK169181 BAE40959 Q3TFD9
AK170429 BAE41790 Q5FWJ3
P20152
X51438 CAA35803 P20152
X56397 CAA39807 P20152

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vim NP_035831 R.norvegicus Vim 81818   NP_112402 100
H.sapiens VIM 7431 Gene Info NP_003371 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)