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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pdgfa, platelet derived growth factor, alpha
Sequence ID:NM_008808
Entrez Gene ID:18590
Ensembl ID:ENSMUSG00000025856

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2|5 82.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 138976013 - 138988377

NM_008808 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
5257139452928139453180
258384139455099139455225
385572139462143139462330
573677139464302139464406
678774139469241139469337
7751019139470662139470906

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3495629Full LengthBC003817platelet derived growth factor, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032834  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008808 NP_032834 Q99L56 PDGF
PDGF_N

Related Sequences

 
mRNAGenPeptSwissProt
M29464 AAA39903 Q99L56
P20033
BC003817 AAH03817 Q99L56
AY324648 AAP88590 Q7TPH7
AK017169 BAB30622 Q9CU96
AK142653 BAE25146 Q3UQ96

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pdgfa NP_032834 R.norvegicus Pdgfa 25266   NP_036933 97
H.sapiens PDGFA 5154 Gene Info NP_148983 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta