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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Scd1, Stearoyl-Coenzyme A desaturase 1
Sequence ID:NM_009127
Entrez Gene ID:20249
Ensembl ID:ENSMUSG00000037071

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 C3|19 43.0

Chromosomal Position (from UCSC)

Chromosomal Position:19: 44395641 - 44407544

NM_009127 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
936764446894044472607
367739094447463144474863
391041154447618244476387
411642464447765444477784
424745204448097644481249
452148444448187544482198

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3599932Full LengthBC007474stearoyl-Coenzyme A desaturase 1
4458907Full LengthBC055453stearoyl-Coenzyme A desaturase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033153  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009127 NP_033153 Q547C4
P13516
EC 1.14.19.1 FA_desaturase

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC007474 AAH07474 Q547C4
P13516
EC 1.14.19.1
BC055453 AAH55453 Q547C4
P13516
EC 1.14.19.1
AF509567 AAM34744 Q547C4
P13516
EC 1.14.19.1
AF509570 AAM34747 Q547C4
P13516
EC 1.14.19.1
AK135642 BAE22598 Q3UXG5  
AK142630 BAE25137 Q547C4
P13516
EC 1.14.19.1
AK148103 BAE28345 Q547C4
P13516
EC 1.14.19.1
CT010171 CAJ18379 Q547C4
P13516
EC 1.14.19.1
CT010332 CAJ18540 Q547C4
P13516
EC 1.14.19.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scd1 NP_033153 R.norvegicus Scd1 246074   NP_631931 94
H.sapiens SCD 6319 Gene Info NP_005054 85
A.gambiae AgaP_AGAP003418 1272792   XP_311704 59
D.melanogaster CG8630 41629   NP_731781 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)