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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Slc8a1, solute carrier family 8 (sodium/calcium exchanger), member 1
Sequence ID:NM_001112798
NM_011406
Entrez Gene ID:20541
Ensembl ID:ENSMUSG00000054640

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 E3|17 48.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 81648187 - 81648786

 Exon Info From UCSC:
NM_001112798
NM_011406

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30532156Full LengthBC079673solute carrier family 8 (sodium/calcium exchanger), member 1
30621011IncompleteBC094585solute carrier family 8 (sodium/calcium exchanger), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035536  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001112798 NP_001106269    
NM_011406 NP_035536 O35157 Na_Ca_ex
Calx-beta

Related Sequences

 
mRNAGenPeptSwissProt
U70033 AAB46708 P70414
AF004666 AAB69167 O35157
AF108396 AAF08995 Q9R074
AF108397 AAF08996 Q9R073
AF108398 AAF08997 Q9R072
BC079673 AAH79673 Q68FL0
DQ388998 ABD46717 Q27PY9
AB080744 BAB85833 Q8R505
AK048160 BAC33262 Q8BXB3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc8a1 NP_001106269 R.norvegicus Slc8a1 29715   NP_062141 98
H.sapiens SLC8A1 6546 Gene Info NP_066920 95
C.elegans ncx-1 180318   NP_001041182 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)