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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox18, SRY-box containing gene 18
Sequence ID:NM_009236
Entrez Gene ID:20672
Ensembl ID:ENSMUSG00000046470

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H4|2 96.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 181669844 - 181671640

NM_009236 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11160181404541181405700
11611619181405886181406344

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3967084Full LengthBC006612SRY-box containing gene 18

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033262  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009236 NP_033262 P43680 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
L29086 AAA56844 P43680
L35032 AAB18615 P43680
BC006612 AAH06612 P43680
AK144281 BAE25811 Q3UND6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox18 NP_033262 R.norvegicus Sox18 311723   NP_001019952 98
H.sapiens SOX18 54345 Gene Info NP_060889 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)