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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pfn1, profilin 1
Sequence ID:NM_011072
Entrez Gene ID:18643
Ensembl ID:ENSMUSG00000018293

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B4|11 42.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 70651933 - 70652128

NM_011072 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
163887046535070465722
3895817046628870466480
5828837046785070468151

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3490976Full LengthBC002080profilin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035202  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011072 NP_035202 Q5SX50
P62962
Profilin

Related Sequences

 
mRNAGenPeptSwissProt
BC002080 AAH02080 Q5SX50
P62962
AK011066 BAB27373 Q5SX50
P62962
AK028117 BAC25757 Q8CEH8
AK150780 BAE29845 Q5SX50
P62962
AK152491 BAE31262 Q3U7V7
AK160191 BAE35684 Q5SX50
P62962
X14425 CAA32586 Q5SX50
P62962

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pfn1 NP_035202 R.norvegicus Pfn1 64303   NP_071956 100
H.sapiens PFN1 5216 Gene Info NP_005013 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta