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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Itgb1, integrin beta 1 (fibronectin receptor beta)
Sequence ID:NM_010578
Entrez Gene ID:16412
Ensembl ID:ENSMUSG00000025809

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 E2|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 128732577 - 128733195

 Exon Info From UCSC:
NM_010578

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5721348Full LengthBC050906integrin beta 1 (fibronectin receptor beta)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034708  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010578 NP_034708 P09055 Integrin_beta
Integrin_B_tail
EGF_2

Related Sequences

 
mRNAGenPeptSwissProt
U37029 AAA80243 Q60993
BC050906 AAH50906 P09055
AK076526 BAC36379 P09055
AK085828 BAC39546 Q8BUD1
AK088729 BAC40532 P09055
AK159689 BAE35290 P09055
AK167682 BAE39731 P09055
X15202 CAA33272 P09055
Y00769 CAA68738 P09055

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Itgb1 NP_034708 R.norvegicus Itgb1 24511   NP_058718 99
H.sapiens ITGB1 3688 Gene Info NP_391988 91
A.gambiae INTB 1272405   XP_311354 46
D.melanogaster mys 44885   NP_524793 46
C.elegans pat-3 175504   NP_497787 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta