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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prdm5, PR domain containing 5
Sequence ID:NM_027547
Entrez Gene ID:70779
Ensembl ID:ENSMUSG00000029913

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 C1|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 65779038 - 65936373

 Exon Info From UCSC:
NM_027547

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861923Full LengthBC138901PR domain containing 5
8861924Full LengthBC138902PR domain containing 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081823  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_027547 NP_081823 Q9CXE0 zf-C2H2
SET

Related Sequences

 
mRNAGenPeptSwissProt
BC138901 AAI38902 Q9CXE0
BC138902 AAI38903 Q9CXE0
AK014501 BAB29400 Q9CXE0
AK018310 BAB31156 Q9D364
AK021384 BAB32392 Q9D1T8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prdm5 NP_081823 R.norvegicus Prdm5 689788   XP_001072014 98
H.sapiens PRDM5 11107 Gene Info NP_061169 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)