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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rnf38, ring finger protein 38
Sequence ID:NM_001038993
NM_175201
Entrez Gene ID:73469
Ensembl ID:ENSMUSG00000035696

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, skin, spleen, stem cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 B1|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 44129423 - 44167648

 Exon Info From UCSC:
NM_001038993
NM_175201

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6408623Full LengthBC060730ring finger protein 38
6848803Full LengthBC062976ring finger protein 38

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780410  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001038993 NP_001034082    
NM_175201 NP_780410 Q8BI21 zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
BC060730 AAH60730 Q8BI21
BC062976 AAH62976 Q8BI21
AK147608 BAE28022 Q3UH35

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rnf38 NP_780410 R.norvegicus Rnf38 171501   NP_604462 99
H.sapiens RNF38 152006 Gene Info NP_073618 98
D.melanogaster mura 41145   NP_731367 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)