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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Kdm5d, Lysine (K)-specific demethylase 5D
Sequence ID:NM_011419
Entrez Gene ID:20592
Ensembl ID:ENSMUSG00000056673

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Y A1|Y

Chromosomal Position (from UCSC)

Chromosomal Position:Y: 927823 - 943163

 Exon Info From UCSC:
NM_011419

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6826863Full LengthBC059077jumonji, AT rich interactive domain 1D (Rbp2 like)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035549  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011419 NP_035549 Q62240 PHD
ARID
JmjC
JmjN
zf-C5HC2
PLU-1

Related Sequences

 
mRNAGenPeptSwissProt
AF127244 AAD53048 Q62240
BC059077 AAH59077 Q62240
AK047790 BAC33157 Q8BQM3
AK140971 BAE24534 Q62240
AK141096 BAE24562 Q3URX5
Z29652 CAA82760 Q62240

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Kdm5d NP_035549 H.sapiens KDM5D 8284 Gene Info NP_001140177 81
S.pombe jmj2 2543275   NP_593492 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)