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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pcolce, procollagen C-endopeptidase enhancer protein
Sequence ID:NM_008788
Entrez Gene ID:18542
Ensembl ID:ENSMUSG00000029718

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2|5 78.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 137605145 - 137611328

NM_008788 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1211138046334138046544
212382138046684138046854
383460138046950138047027
461741138048054138048334
742878138048635138048771
8791003138049182138049306
10041262138050118138050376
12631371138051624138051732
13721539138052464138052631

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063899Full LengthBC160251procollagen C-endopeptidase enhancer protein

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008788 NP_032814 Q61398  

Related Sequences

 
mRNAGenPeptSwissProt
BC160251 AAI60251  
AB008548 BAA23280 Q61398
Q3UIP2
AK142615 BAE25130 Q61398
Q3UIP2
AK144392 BAE25865 Q3UN82
AK146829 BAE27464 Q61398
Q3UIP2
AK159430 BAE35077 Q3TX39
X57337 CAA40612 Q61398

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pcolce NP_032814 R.norvegicus Pcolce 29569   NP_062110 96
H.sapiens PCOLCE 5118 Gene Info NP_002584 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)