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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Fam54a, family with sequence similarity 54, member A
Sequence ID:NM_027930
Entrez Gene ID:71804
Ensembl ID:ENSMUSG00000019992

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 A3|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 20347824 - 20361319

NM_027930 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11052006762420067728
1062062006814020068240
2073112007262920072733
3124242007317220073284
4256602007383520074070
66111722007706020077571
117323072008034020081474

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5036908Full LengthBC019132family with sequence similarity 54, member A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082206  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_027930 NP_082206 Q8VED8
Q9D0I1
DUF729

Related Sequences

 
mRNAGenPeptSwissProt
BC019132 AAH19132 Q8VED8
AK011410 BAB27601 Q9D0I1
AK016786 BAB30429 Q9D456

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Fam54a NP_082206 H.sapiens FAM54A 113115 Gene Info NP_001092756 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)