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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rpl6, Ribosomal protein L6
Sequence ID:NM_011290
Entrez Gene ID:19988
Ensembl ID:ENSMUSG00000029614

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 F|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 121204535 - 121208966

NM_011290 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
152121654509121654560
53310121655414121655671
311412121655762121655863
413556121656675121656818
557605121657155121657203
606790121658399121658583
7911249121658790121659248

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3979296Full LengthBC106121ribosomal protein L6
5692572Full LengthBC062880ribosomal protein L6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035420  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011290 NP_035420 P47911 Ribosomal_L6e
Ribosomal_L6e_N

Related Sequences

 
mRNAGenPeptSwissProt
BC062880 AAH62880 P47911
BC106121 AAI06122 P47911
Q3UCH0
AK135175 BAE22452 P47911
Q3UCH0
AK148479 BAE28577 Q3UFI4
AK150540 BAE29643 P47911
Q3UCH0
AK151022 BAE30040 P47911
Q3UCH0
AK151344 BAE30322 P47911
Q3UCH0
AK151759 BAE30666 P47911
Q3UCH0
AK153208 BAE31807 P47911
Q3UCH0
AK153507 BAE32052 P47911
Q3UCH0
AK167439 BAE39525 P47911
Q3UCH0
X81987 CAA57513 P47911

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rpl6 NP_035420 M.musculus Gm6136 620213 Gene Info XP_890389 100
M.musculus Gm6807 627889 Gene Info XP_001480277 98
M.musculus Gm5428 432502 Gene Info XP_483949 98
R.norvegicus Rpl6 117042   NP_446423 92
H.sapiens RPL6 6128 Gene Info NP_000961 90
A.thaliana AT1G74050 843744   NP_177545 55
C.elegans rpl-6 176015   NP_498584 54
A.thaliana AT1G74060 843746   NP_177546 54
A.thaliana AT1G18540 838435   NP_173289 53
D.melanogaster RpL6 43723   NP_651876 50
S.cerevisiae RPL6B 851169   NP_013553 49
N.crassa NCU02707 3881630   XP_965480 49
S.cerevisiae RPL6A 854902   NP_013638 47
A.gambiae AgaP_AGAP001911 1281215   XP_321154 46
S.pombe rpl6 2539372   NP_588190 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)