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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Syt10, synaptotagmin X
Sequence ID:NM_018803
Entrez Gene ID:54526
Ensembl ID:ENSMUSG00000063260

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15|15 F1

Chromosomal Position (from UCSC)

Chromosomal Position:15: 89782392 - 89841769

NM_018803 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12548961282389613076
2553848961746189617590
3855568962120289621373
5576778962301489623134
67812458964449389645060
124616038965725089657607
160418458967204989672290

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130147Full LengthBC125632synaptotagmin X
40130149Full LengthBC125634synaptotagmin X

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061273  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018803 NP_061273 Q9R0N4 C2

Related Sequences

 
mRNAGenPeptSwissProt
BC125632 AAI25633 Q059J3
BC125634 AAI25635 Q9R0N4
Q059J3
AB026807 BAA85779 Q9R0N4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Syt10 NP_061273 R.norvegicus Syt10 60567   NP_113854 99
H.sapiens SYT10 341359 Gene Info NP_945343 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)