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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cab39, calcium binding protein 39
Sequence ID:NM_133781
Entrez Gene ID:12283
Ensembl ID:ENSMUSG00000036707

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 C5|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 85850160 - 85851577

NM_133781 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13758769002187690395
3765328771493187715087
5336978773189787732061
6988168773386087733978
8179858773877287738940
98610458774116787741226
104611118774398487744049
111212558774485187744994
125638008774560787748151

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3990872Full LengthBC020041calcium binding protein 39
4952585IncompleteBC029053calcium binding protein 39

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598542  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_133781 NP_598542 Q06138 Mo25

Related Sequences

 
mRNAGenPeptSwissProt
S51858 AAB24801 Q06138
BC020041 AAH20041 Q06138
BC029053 AAH29053 Q8K312
AK144665 BAE25997 Q06138

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cab39 NP_598542 H.sapiens CAB39 51719 Gene Info NP_001124321 99
A.gambiae AgaP_AGAP011060 1269445   XP_308076 73
A.gambiae AgaP_AGAP000812 1272400   XP_311350 73
D.melanogaster Mo25 39858   NP_524117 72
C.elegans mop-25.1 180685   NP_001024819 64
C.elegans mop-25.2 174527   NP_496092 61
S.pombe pmo25 2542388   NP_594685 52
A.thaliana AT4G17270 827441   NP_193460 45
A.thaliana AT5G47540 834804   NP_199565 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)