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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Kdm6b, KDM1 lysine (K)-specific demethylase 6B
Sequence ID:NM_001017426
Entrez Gene ID:216850
Ensembl ID:ENSMUSG00000018476

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B3|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 69401512 - 69402691

 Exon Info From UCSC:
NM_001017426

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30362899Full LengthBC075632jumonji domain containing 3
1378940IncompleteBC038313jumonji domain containing 3
4037702IncompleteBC029201jumonji domain containing 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001017426  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001017426 NP_001017426 Q5NCY0 JmjC

Related Sequences

 
mRNAGenPeptSwissProt
BC029201 AAH29201 Q8K0Z1
BC075632 AAH75632 Q5NCY0
AK129121 BAC97931 Q5NCY0
AK136019 BAE22775 Q5NCY0
AK142488 BAE25082 Q3UQG0
AK006879 BAE43198 Q3V484

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Kdm6b NP_001017426 R.norvegicus Kdm6b 363630   NP_001102299 97
H.sapiens KDM6B 23135 Gene Info NP_001073893 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)