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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Bgn, biglycan
Sequence ID:NM_007542
Entrez Gene ID:12111
Ensembl ID:ENSMUSG00000031375

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:X B|X 29.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 73483638 - 73492382

NM_007542 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11287072897370729100
1293807073611770736368
3814937073665670736768
4947077073728670737499
7088187073806170738171
8199127073830170738394
91310517073853870738676
105223897073993770741274

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3594469Full LengthBC005452biglycan
4237268Full LengthBC019502biglycan
30061850Full LengthBC052857biglycan

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031568  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007542 NP_031568 Q3TNY9
P28653
LRR_1
LRRNT

Related Sequences

 
mRNAGenPeptSwissProt
L20276 AAA64360 P28653
BC005452 AAH05452 Q3TNY9
P28653
BC019502 AAH19502 Q3TNY9
P28653
BC052857 AAH52857 Q7TMW3
BC057185 AAH57185 Q6PG76
AK135496 BAE22555 Q3UXK8
AK155973 BAE33531 Q3TNY9
P28653
AK164867 BAE37948 Q3TNY9
P28653
AK171870 BAE42709 Q3TAF9
X53928 CAA37875 Q3TNY9
P28653
Y11758 CAA72422 P28653

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Bgn NP_031568 R.norvegicus Bgn 25181   NP_058783 99
H.sapiens BGN 633 Gene Info NP_001702 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta