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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Txn1, thioredoxin 1
Sequence ID:NM_011660
Entrez Gene ID:22166
Ensembl ID:ENSMUSG00000028367

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 B3|4 24.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 57943372 - 57956291

NM_011660 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15955795624457956838
5966615795801857958083
6627215796371057963769
7228265796466857964772
82710515796905857969282

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3376881Full LengthBC094415thioredoxin 1
4216106Full LengthBC010756thioredoxin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035790  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011660 NP_035790 P10639 Thioredoxin

Related Sequences

 
mRNAGenPeptSwissProt
BC010756 AAH10756 P10639
BC094415 AAH94415 P10639
AK007537 BAB25096 P10639
AK007790 BAB25256 P10639
X77585 CAA54688 P10639

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Txn1 NP_035790 R.norvegicus Txn1 116484   NP_446252 98
H.sapiens TXN 7295 Gene Info NP_003320 89
D.melanogaster Trx-2 34281   NP_523526 51
A.gambiae TRX1 1278949   XP_318603 50
A.thaliana TRX2 833992   NP_198811 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)