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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chpf, chondroitin polymerizing factor
Sequence ID:NM_001001565
NM_001001566
Entrez Gene ID:74241
Ensembl ID:ENSMUSG00000032997

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 C4|1 41.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 75474575 - 75479119

 Exon Info From UCSC:
NM_001001565
NM_001001566

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6334418Full LengthBC071273chondroitin polymerizing factor
4483832IncompleteBC030889DNA segment, Chr 1, Brigham & Women's Genetics 1363 expressed
5687244IncompleteBC060598chondroitin polymerizing factor
5687269IncompleteBC057050chondroitin polymerizing factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001001566  NP_001001565  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001001565 NP_001001565     CHGN
NM_001001566 NP_001001566 Q6IQX7 EC 2.4.1.226
EC 2.4.1.175
CHGN

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC071273 AAH71273 Q6IQX7 EC 2.4.1.226
EC 2.4.1.175

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chpf NP_001001566 R.norvegicus Chpf 316533   NP_001005906 98
H.sapiens CHPF 79586 Gene Info NP_078812 94
D.melanogaster CG4351 32259   NP_572853 32
C.elegans mig-22 176231   NP_498934 31
A.gambiae AgaP_AGAP001050 1278649   XP_318249 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)