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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Psmd11, proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Sequence ID:NM_178616
Entrez Gene ID:69077
Ensembl ID:ENSMUSG00000017428

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B5|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 80428647 - 80471909

 Exon Info From UCSC:
NM_178616

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6767671Full LengthBC100595proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
8733885Full LengthBC119136proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
8733887Full LengthBC119138proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
30283128Full LengthBC090980proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
30677672Full LengthBC090664proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
3964625IncompleteBC055457proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
5006212IncompleteBC037590proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
5369772IncompleteBC030432proteasome (prosome, macropain) 26S subunit, non-ATPase, 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_848731  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178616 NP_848731 Q8BK73
Q8BG32
PCI

Related Sequences

 
mRNAGenPeptSwissProt
BC030432 AAH30432 Q8K2N7
BC055457 AAH55457 Q7TMI0
BC090664 AAH90664 Q5BKQ9
BC090980 AAH90980 Q5BKQ9
Q8BG32
BC100595 AAI00596 Q497E8
BC119136 AAI19137 Q5BKQ9
BC119138 AAI19139 Q5BKQ9
AK029365 BAC26419 Q8C0Z6
AK051738 BAC34746 Q8BG32
AK076002 BAC36112 Q8BK73
AK089942 BAC41009 Q8BG32
AK136049 BAE22795 Q3UWW9
AK167559 BAE39623 Q5BKQ9
Q8BG32
AK168289 BAE40234 Q3THG2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Psmd11 NP_848731 H.sapiens PSMD11 5717 Gene Info NP_002806 100
R.norvegicus Psmd11 303353   NP_001100497 100
A.gambiae AgaP_AGAP001440 1281739   XP_321691 68
D.melanogaster Rpn6 36638   NP_725412 68
S.pombe rpn6 2541807   NP_593111 57
C.elegans rpn-6 175972   NP_001022621 54
A.thaliana ATS9 839789   NP_174210 53
N.crassa NCU01596 3872655   XP_956507 52
S.cerevisiae RPN6 851461   NP_010186 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)