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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Syngr3, synaptogyrin 3
Sequence ID:NM_011522
Entrez Gene ID:20974
Ensembl ID:ENSMUSG00000007021

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A3.3|17

Chromosomal Position (from UCSC)

Chromosomal Position:17: 24685761 - 24689941

NM_011522 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
113492482203624823384
135014922482346324823605
149317302482444724824684
173119592482666524826893

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5369651Full LengthBC025022synaptogyrin 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035652  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011522 NP_035652 Q8R191 MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
AF117207 AAD28556 Q8R191
BC025022 AAH25022 Q8R191
AK048753 BAC33444 Q8R191
AK081164 BAC38151 Q8R191
AK082167 BAC38430 Q8R191

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Syngr3 NP_035652 R.norvegicus Syngr3 302975   NP_001100455 98
H.sapiens SYNGR3 9143 Gene Info NP_004200 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)