Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sec62, SEC62 homolog (S. cerevisiae)
Sequence ID:NM_027016
Entrez Gene ID:69276
Ensembl ID:ENSMUSG00000027706

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 A3|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 30793061 - 30809967

NM_027016 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15083069179730692304
5096173069905230699160
6187233069998130700086
7249283070874330708947
92910213070936630709458
102210823071121730711277
108312023071315530713274
120339663071742130720184

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6332701Full LengthBC067202SEC62 homolog (S. cerevisiae)
4485281IncompleteBC017162SEC62 homolog (S. cerevisiae)
5347105IncompleteBC023720SEC62 homolog (S. cerevisiae)
6545004IncompleteBC048532translocation protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081292  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_027016 NP_081292 Q8BU14 Sec62

Related Sequences

 
mRNAGenPeptSwissProt
BC017162 AAH17162 Q05DA2
BC023720 AAH23720 Q8CIK3
BC067202 AAH67202 Q8BU14
AK013922 BAB29058 Q9CRY0
AK016981 BAB30536 Q9CUB5
AK075621 BAC35864 Q8BK88
AK088093 BAC40140 Q8BU14

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sec62 NP_081292 R.norvegicus Sec62 294912   NP_001029301 98
H.sapiens SEC62 7095 Gene Info NP_003253 94
C.elegans C18E9.2 174429   NP_495908 43
D.melanogaster Trp1 34333   NP_477008 42
A.gambiae AgaP_AGAP009788 1279201   XP_318883 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)