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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Hadh, hydroxyacyl-Coenzyme A dehydrogenase
Sequence ID:NM_008212
Entrez Gene ID:15107
Ensembl ID:ENSMUSG00000027984

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 G3|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 131269126 - 131272053

NM_008212 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1864130936341130937204
865981130938460130938576
9821054130943854130943926
10551144130945433130945522
11451271130948077130948203
12721429130951333130951490
14301558130952720130952848
15591720130974793130974954

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30303218Full LengthBC064712hydroxyacyl-Coenzyme A dehydrogenase
5136060IncompleteBC028833hydroxyacyl-Coenzyme A dehydrogenase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032238  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_008212 NP_032238 Q61425 EC 1.1.1.35 3HCDH
3HCDH_N

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC028833 AAH28833 Q61425 EC 1.1.1.35
BC064712 AAH64712 Q61425 EC 1.1.1.35
D29639 BAA06122 Q61425 EC 1.1.1.35
AK132260 BAE21064 Q61425 EC 1.1.1.35
AK148486 BAE28581 Q61425 EC 1.1.1.35
AK167024 BAE39197 Q61425 EC 1.1.1.35
AK168238 BAE40188 Q61425 EC 1.1.1.35
AK168877 BAE40695 Q61425 EC 1.1.1.35
AK169261 BAE41023 Q61425 EC 1.1.1.35

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hadh NP_032238 R.norvegicus Hadh 113965   NP_476534 98
H.sapiens HADH 3033 Gene Info NP_001171634 90
C.elegans B0272.3 181169   NP_509584 56
C.elegans F54C8.1 186222   NP_499075 50
A.thaliana AT3G15290 820760   NP_188147 42
N.crassa NCU09553 3874919   XP_958772 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)