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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Coro1c, coronin, actin binding protein 1C
Sequence ID:NM_011779
Entrez Gene ID:23790
Ensembl ID:ENSMUSG00000004530

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 F|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 113844069 - 113908677

 Exon Info From UCSC:
NM_011779

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4167810Full LengthBC019444coronin, actin binding protein 1C
4918161Full LengthBC099671coronin, actin binding protein 1C
5716526Full LengthBC085498coronin, actin binding protein 1C
30460345Full LengthBC087553coronin, actin binding protein 1C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035909  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011779 NP_035909 Q499X7
Q9WUM4
WD40

Related Sequences

 
mRNAGenPeptSwissProt
AF143957 AAD32705 Q9WUM4
BC019444 AAH19444 Q499X7
Q9WUM4
BC085498 AAH85498 Q499X7
Q9WUM4
BC087553 AAH87553 Q5PPQ7
BC099671 AAH99671 Q499X7
Q9WUM4
AK079327 BAC37609 Q499X7
Q9WUM4
AK082986 BAC38722 Q499X7
Q9WUM4
AK088101 BAC40144 Q499X7
Q9WUM4
AK151017 BAE30036 Q499X7
Q9WUM4
AK151515 BAE30464 Q3U8F0
AK151749 BAE30659 Q499X7
Q9WUM4
AK152246 BAE31068 Q3U8F0
AK159506 BAE35139 Q499X7
Q9WUM4
AK167089 BAE39246 Q499X7
Q9WUM4
AK169262 BAE41024 Q3TF74
AK169404 BAE41150 Q3TEU8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Coro1c NP_035909 R.norvegicus Coro1c 501841   NP_001102797 99
H.sapiens CORO1C 23603 Gene Info NP_055140 97
A.gambiae AgaP_AGAP005891 1276557   XP_001688746 61
D.melanogaster coro 35596   NP_995753 57
C.elegans cor-1 176440   NP_741268 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)