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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chdh, choline dehydrogenase
Sequence ID:NM_001136240
NM_172264
NM_175343
Entrez Gene ID:218865
Ensembl ID:ENSMUSG00000015970

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 B|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 30022632 - 30038247

 Exon Info From UCSC:
NM_001136240
NM_172264
NM_175343

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3979709Full LengthBC039186choline dehydrogenase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780552  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001136240 NP_001129712      
NM_172264 NP_758468      
NM_175343 NP_780552 Q8BJ64 EC 1.1.99.1 GMC_oxred_N
GMC_oxred_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC039186 AAH39186 Q8BJ64 EC 1.1.99.1
AK030900 BAC27176 Q8BJ64 EC 1.1.99.1
AK042454 BAC31266 Q8BY20  
AK087570 BAC39931 Q8BIU1  
AK164042 BAE37601 Q8BJ64 EC 1.1.99.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chdh NP_001129712 R.norvegicus Chdh 290551   NP_942026 92
H.sapiens CHDH 55349 Gene Info NP_060867 84
C.elegans C34C6.4 174390   NP_495846 59
N.crassa NCU09798 3876255   XP_960108 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)