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Gene Info

Gene Information For:Mm. Clcn3, chloride channel 3
Sequence ID:NM_007711
NM_173873
NM_173874
NM_173876
Entrez Gene ID:12725
Ensembl ID:ENSMUSG00000004319

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, synovium, t-cell, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 B3.1|8 32.2 cM

Chromosomal Position (from UCSC)

Chromosomal Position:8: 60913084 - 60975891

 Exon Info From UCSC:
NM_007711
NM_173873
NM_173874
NM_173876

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6833732Full LengthBC057133chloride channel 3
4953528IncompleteBC057855chloride channel 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031737  NP_776301  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007711 NP_031737 Q790S0
P51791
CBS
Voltage_CLC
NM_173873 NP_776298 P51791  
NM_173874 NP_776299    
NM_173876 NP_776301 Q8K4W8 CBS
Voltage_CLC

Related Sequences

 
mRNAGenPeptSwissProt
AF029347 AAB95162 P51791
BC057133 AAH57133 Q6PGA5
BC057855 AAH57855 Q6PEV2
AK141136 BAE24568 P51791
AK149276 BAE28786 Q3UEX5
AK150688 BAE29767 Q3TF45
AK159698 BAE35298 P51791
AK161327 BAE36325 Q3TTK0
AK162639 BAE37002 P51791
AK169297 BAE41053 Q3TF45
X78874 CAA55476 Q790S0
P51791

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clcn3 NP_776299 H.sapiens CLCN3 1182 Gene Info NP_776297 99
R.norvegicus Clcn3 84360   NP_445815 99
D.melanogaster ClC-c 39759   NP_730105 63
A.gambiae AgaP_AGAP005777 1276446   XP_001688728 63
C.elegans clh-5 174449   NP_495940 55
N.crassa NCU06444 3873504   XP_957335 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)