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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Sec22a, SEC22 vesicle trafficking protein homolog A (S. cerevisiae)
Sequence ID:NM_133704
Entrez Gene ID:317717
Ensembl ID:ENSMUSG00000034473

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B3|16

Chromosomal Position (from UCSC)

Chromosomal Position:16: 35313412 - 35363857

NM_133704 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
131573531121635314372
315832233531888935318954
322433393532958335329698
334035343534768435347878
353536983534891635349079
369938973536164635361844
389839923536390935364003

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861991Full LengthBC138969SEC22 vesicle trafficking protein homologe A (S. cerevisiae)
8861993Full LengthBC138971SEC22 vesicle trafficking protein homologe A (S. cerevisiae)
9054040Full LengthBC145478SEC22 vesicle trafficking protein homologe A (S. cerevisiae)
3587118IncompleteBC010189SEC22 vesicle trafficking protein homologe A (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598465  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_133704 NP_598465 Q8BH47 Synaptobrevin

Related Sequences

 
mRNAGenPeptSwissProt
BC010189 AAH10189 Q8BH47
BC138969 AAI38970 B2RSR2
BC138971 AAI38972 B2RSR2
BC145478 AAI45479 B7ZNW3
AK044615 BAC32004 Q8BH47
AK082516 BAC38514 Q8BH47

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sec22a NP_598465 H.sapiens SEC22A 26984 Gene Info NP_036562 97
R.norvegicus Sec22a 117513   NP_476488 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)