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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ppargc1a, peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
Sequence ID:NM_008904
NR_027710
Entrez Gene ID:19017
Ensembl ID:ENSMUSG00000029167

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 C1|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 51457981 - 51553844

 Exon Info From UCSC:
NM_008904

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30094033Full LengthBC066868peroxisome proliferative activated receptor, gamma, coactivator 1 alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032930  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008904 NP_032930 Q3UP72
O70343
RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
AF049330 AAC13554 Q3UP72
O70343
BC066868 AAH66868 O70343
AK032149 BAC27725 Q8CCT1
AK043827 BAC31667 Q8BRP2
AK138668 BAE23740 Q3UP72
O70343
AK143753 BAE25525 Q3UP72
O70343
AB061324 BAE46507 Q3LIG2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ppargc1a NP_032930 R.norvegicus Ppargc1a 83516   NP_112637 98
H.sapiens PPARGC1A 10891 Gene Info NP_037393 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta