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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Fxr1, fragile X mental retardation gene 1, autosomal homolog
Sequence ID:NM_001113188
NM_001113189
NM_008053
Entrez Gene ID:14359
Ensembl ID:ENSMUSG00000027680

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 B

Chromosomal Position (from UCSC)

Chromosomal Position:3: 34047011 - 34069338

 Exon Info From UCSC:
NM_001113188
NM_001113189
NM_008053

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5041635Full LengthBC019139fragile X mental retardation gene 1, autosomal homolog

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032079  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001113188 NP_001106659 Q61584  
NM_001113189 NP_001106660    
NM_008053 NP_032079   KH_1
Agenet

Related Sequences

 
mRNAGenPeptSwissProt
AF124385 AAD30211 Q61584
BC019139 AAH19139 Q61584
AK049231 BAC33624 Q8C7U4
X90875 CAA62383 Q61584

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Fxr1 NP_001106659 R.norvegicus Fxr1 361927   NP_001012179 99
H.sapiens FXR1 8087 Gene Info NP_005078 98
D.melanogaster Fmr1 37528   NP_611645 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)