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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ino80c, INO80 complex subunit C
Sequence ID:NM_172625
Entrez Gene ID:225280
Ensembl ID:ENSMUSG00000047989

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18 A2|18

Chromosomal Position (from UCSC)

Chromosomal Position:18: 24106304 - 24121829

NM_172625 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
118982426326124265158
189919662427021524270282
196720782427116124271272
207921892427257724272687
219023602428014924280319

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6740719Full LengthBC060961INO80 complex subunit C
5707071IncompleteBC056426RIKEN cDNA D030070L09 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_766213  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_172625 NP_766213 Q8BHA0 YL1_C

Related Sequences

 
mRNAGenPeptSwissProt
BC060961 AAH60961 Q8BHA0
AK077290 BAC36733 Q8BHA0
AK083718 BAC39004 Q8BHA0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ino80c NP_766213 R.norvegicus Ino80c 291737   NP_001017446 98
H.sapiens INO80C 125476 Gene Info NP_001092287 91
A.gambiae AgaP_AGAP008390 4578179   XP_001237881 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)