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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Copg, coatomer protein complex, subunit gamma
Sequence ID:NM_017477
NM_201244
Entrez Gene ID:54161
Ensembl ID:ENSMUSG00000030058

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 D1|6 38.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 87887939 - 87913594

 Exon Info From UCSC:
NM_017477
NM_201244

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3992144Full LengthBC024686coatomer protein complex, subunit gamma
4189311Full LengthBC024896coatomer protein complex, subunit gamma
3591763IncompleteBC008553coatomer protein complex, subunit gamma
4038477IncompleteBC060744coatomer protein complex, subunit gamma

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_957696  NP_059505  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017477 NP_059505 Q9QZE5 Adaptin_N
NM_201244 NP_957696 Q7TNQ1 Adaptin_N

Related Sequences

 
mRNAGenPeptSwissProt
AF187079 AAF01325 Q9QZE5
BC008553 AAH08553 Q9QZE5
BC024686 AAH24686 Q9QZE5
BC024896 AAH24896 Q9QZE5
BC056168 AAH56168 Q7TNQ1
AK049417 BAC33743 Q9QZE5
AK077461 BAC36811 Q9QZE5
AK147895 BAE28212 Q9QZE5
AK151284 BAE30269 Q9QZE5
AK151816 BAE30713 Q9QZE5
AK153142 BAE31753 Q9QZE5
AK164280 BAE37716 Q9QZE5
AK169256 BAE41019 Q9QZE5
AK171950 BAE42743 Q9QZE5
AK172519 BAE43046 Q9QZE5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Copg NP_059505 R.norvegicus Copg 297428   NP_001026992 100
H.sapiens COPG1 22820 Gene Info NP_057212 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)