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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Vti1a, vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
Sequence ID:NM_016862
Entrez Gene ID:53611
Ensembl ID:ENSMUSG00000024983

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 D2|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 55316349 - 55623968

NM_016862 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11945539084055391033
1952535539642855396486
2543645540283555402945
3654425545543155455508
4435275546627355466357
5285985557300055573070
5996605557373255573793
66134055569830655701050

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5012235Full LengthBC019386vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
6839437Full LengthBC089321vesicle transport through interaction with t-SNAREs homolog 1A (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058558  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016862 NP_058558 O89116 V-SNARE

Related Sequences

 
mRNAGenPeptSwissProt
AF035209 AAC23482 O89116
AF035823 AAC32049 O89116
BC019386 AAH19386 O89116
BC089321 AAH89321 Q5FWJ7
AK004751 BAB23532 O89116
AK014541 BAC25442 Q8CET6
AK015010 BAC25456 Q8CES8
AK028646 BAC26046 O89116
AK035895 BAC29232 Q8CBJ3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vti1a NP_058558 R.norvegicus Vti1a 65277   NP_075589 96
H.sapiens VTI1A 143187 Gene Info NP_660207 95
C.elegans Y57G11C.4 178397   NP_502781 44
A.gambiae AgaP_AGAP009322 1271234   XP_309991 42
D.melanogaster Vti1 38085   NP_612053 39
A.thaliana SGR4 833947   NP_198767 34
S.cerevisiae VTI1 855237   NP_013924 34
S.pombe vti1 2540970   NP_596668 34
N.crassa NCU05959 3874727   XP_958573 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)