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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Bckdha, branched chain ketoacid dehydrogenase E1, alpha polypeptide
Sequence ID:NM_007533
Entrez Gene ID:12039
Ensembl ID:ENSMUSG00000060376

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, pooled tissue, retina, salivary gland, skin, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 25629946 - 25658750

NM_007533 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15822641487026415451
5837542641601826416189
7558962641636026416501
89711032641665626416862
110412652641825826418419
126613742642318026423288
137514612642647526426561
146216442642666226426844
164517732644365126443779

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3600452Full LengthBC003787branched chain ketoacid dehydrogenase E1, alpha polypeptide

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031559  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_007533 NP_031559 Q99L69   E1_dh

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
L47335 AAB38422 P50136 EC 1.2.4.4
BC003787 AAH03787 Q99L69  
AK154734 BAE32795 Q3U3J1  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Bckdha NP_031559 R.norvegicus Bckdha 25244   NP_036914 98
H.sapiens BCKDHA 593 Gene Info NP_000700 93
C.elegans Transketolase 176716   NP_001033376 64
D.melanogaster CG8199 41149   NP_649905 61
A.gambiae AgaP_AGAP003136 1273808   XP_312823 59
N.crassa NCU09864 3876328   XP_960181 54
A.thaliana AT5G09300 830789   NP_568209 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)