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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox8, SRY-box containing gene 8
Sequence ID:NM_011447
Entrez Gene ID:20681
Ensembl ID:ENSMUSG00000024176

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A3.3|17 8.0

Chromosomal Position (from UCSC)

Chromosomal Position:17: 25565918 - 25570686

NM_011447 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
121892570283725705025
219024222570577225706004
242329992570705425707630

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6306276Full LengthBC085619SRY-box containing gene 8

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035577  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011447 NP_035577 Q04886
Q543C3
HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC043704 AAH43704 Q80V52
BC085619 AAH85619 Q04886
Q543C3
AK032459 BAC27879 Q04886
Q543C3
AK033460 BAC28299 Q8CCB9
AK034231 BAC28640 Q8CBZ8
AK053716 BAC35488 Q04886
Q543C3
Z18957 CAA79482 Q04886

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox8 NP_035577 R.norvegicus Sox8 302993   NP_001100459 98
H.sapiens SOX8 30812 Gene Info NP_055402 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)