Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ybx1, Y box protein 1
Sequence ID:NM_011732
Entrez Gene ID:22608
Ensembl ID:ENSMUSG00000028639

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4|4 D1

Chromosomal Position (from UCSC)

Chromosomal Position:4: 119278953 - 119294294

NM_011732 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11041118949931118950971
10421307118951538118951803
13081390118954174118954256
13911693118954750118955052
16941783118955385118955474
17841817118957713118957746
18181881118966346118966409
18822191118966808118967117

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3481736Full LengthBC029747Y box protein 1
3968068Full LengthBC013620Y box protein 1
4024261Full LengthBC106143Y box protein 1
4167717Full LengthBC031472Y box protein 1
4215685Full LengthBC013450Y box protein 1
4922840Full LengthBC049977Y box protein 1
6530605Full LengthBC061634Y box protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035862  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011732 NP_035862   CSD

Related Sequences

 
mRNAGenPeptSwissProt
M60419 AAA40577 Q3UBT1
P62960
M62867 AAA63390 P62960
U33196 AAA75475 Q60950
U33197 AAA75476 Q60951
AF038994 AAB94768 Q71V06
BC013450 AAH13450 Q3UBT1
P62960
BC013620 AAH13620 Q3UBT1
P62960
BC029747 AAH29747 Q3UBT1
P62960
BC031472 AAH31472 Q3UBT1
P62960
BC049977 AAH49977 Q810K5
BC061634 AAH61634 Q3UBT1
P62960
BC106143 AAI06144 Q3UBT1
P62960
AK044081 BAC31766 Q8BRJ5
AK150821 BAE29883 Q3UBT1
P62960
X57621 CAA40847 P62960

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ybx1 NP_035862 R.norvegicus Ybx1 500538   NP_113751 100
H.sapiens YBX1 4904 Gene Info NP_004550 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta