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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prdm16, PR domain containing 16
Sequence ID:NM_001177995
NM_027504
Entrez Gene ID:70673
Ensembl ID:ENSMUSG00000039410

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 E2|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 154320291 - 154636760

 Exon Info From UCSC:
NM_001177995
NM_027504

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6409778Full LengthBC059838PR domain containing 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081780  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001177995 NP_001171466    
NM_027504 NP_081780 A2A935 zf-C2H2

Related Sequences

 
mRNAGenPeptSwissProt
BC059838 AAH59838 A2A935
AK017846 BAB30971 Q9CS56
AK083829 BAC39032 Q8BNF5
AB078338 BAC79382 A2A935
AK173230 BAD32508 A2A935
AK152396 BAE31184 Q3U835

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prdm16 NP_081780 H.sapiens PRDM16 63976 Gene Info NP_071397 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)