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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lynx1, Ly6/neurotoxin 1
Sequence ID:NM_011838
Entrez Gene ID:23936
Ensembl ID:ENSMUSG00000022594

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 D3|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 74747856 - 74752953

NM_011838 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
135727457828574581856
357336747458197274582073
367538577458228474582466
385839527458331474583408

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5325123Full LengthBC037541Ly6/neurotoxin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035968  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011838 NP_035968 Q9WVC2 UPAR_LY6

Related Sequences

 
mRNAGenPeptSwissProt
AF141377 AAD38939 Q9WVC2
BC037541 AAH37541 Q9WVC2
AK013827 BAB29006 Q9WVC2
AK161907 BAE36629 Q9WVC2
AK162920 BAE37115 Q9WVC2
AK165295 BAE38124 Q9WVC2
AK165314 BAE38132 Q9WVC2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lynx1 NP_035968 R.norvegicus Lynx1 300018   NP_001124018 100
H.sapiens LYNX1 66004 Gene Info NP_803252 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)