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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Msx1, homeobox, msh-like 1
Sequence ID:NM_010835
Entrez Gene ID:17701
Ensembl ID:ENSMUSG00000048450

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 B3|5 21.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 37821033 - 37824369

NM_010835 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
112103821172938212938
121119313821510338215823

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4923403Full LengthBC016426homeobox, msh-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034965  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010835 NP_034965   Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
AF308572 AAG32466 P13297
BC016426 AAH16426 P13297
X14759 CAA32871 P13297
X59251 CAA41944 P13297

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Msx1 NP_034965 R.norvegicus Msx1 81710   NP_112321 99
H.sapiens MSX1 4487 Gene Info NP_002439 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)