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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sf1, splicing factor 1
Sequence ID:NM_001110791
NM_011750
Entrez Gene ID:22668
Ensembl ID:ENSMUSG00000024949

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19|19 B

Chromosomal Position (from UCSC)

Chromosomal Position:19: 6367095 - 6368758

 Exon Info From UCSC:
NM_001110791
NM_011750

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3157495Full LengthBC009091splicing factor 1
30055109Full LengthBC055370splicing factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035880  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001110791 NP_001104261    
NM_011750 NP_035880 Q64213 KH_1

Related Sequences

 
mRNAGenPeptSwissProt
BC009091 AAH09091 Q64213
BC055370 AAH55370 Q64213
AK146151 BAE26935 Q3UK67
AK147081 BAE27661 Q3UI45
AK157845 BAE34225 Q3TZI3
X80159 CAA56440 Q64213
X85802 CAA59797 Q64213

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sf1 NP_001104261 R.norvegicus Sf1 117855   NP_001104263 100
H.sapiens SF1 7536 Gene Info NP_004621 99
D.melanogaster SF1 43912   NP_524654 56
C.elegans sfa-1 178486   NP_503033 45
N.crassa NCU04110 3877430   XP_961266 45
S.cerevisiae MSL5 850807   NP_013217 44
S.pombe bpb1 2538832   NP_587871 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)