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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Lsm5, LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Sequence ID:NM_025520
Entrez Gene ID:66373
Ensembl ID:ENSMUSG00000091625

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6|6 C1

Chromosomal Position (from UCSC)

Chromosomal Position:6: 56701064 - 56704693

NM_025520 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
162425665105656651282
2433155665208956652161
3163435665299956653026
3444395665330756653402
4405165665461656654692

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6601124Full LengthBC048459LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
30295556Full LengthBC061085LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
40130903Full LengthBC132626LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
40130905Full LengthBC132628LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079796  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025520 NP_079796 P62322 LSM

Related Sequences

 
mRNAGenPeptSwissProt
BC048459 AAH48459 P62322
BC061085 AAH61085 P62322
BC132626 AAI32627 P62322
BC132628 AAI32629 P62322
AK009617 BAB26394 P62322
AK011218 BAB27475 P62322

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lsm5 NP_079796 H.sapiens LSM5 23658 Gene Info NP_036454 100
R.norvegicus Lsm5 306222   NP_001100759 100
D.melanogaster CG6610 38693   NP_648022 85
A.gambiae AgaP_AGAP006604 1277188   XP_316632 84
A.thaliana SAD1 834945   NP_199698 77
C.elegans lsm-5 180047   NP_506870 74
N.crassa NCU03766 5847639   XP_001728350 73
P.falciparum PF14_0411 811993   XP_001348585 60
S.pombe lsm5 2540723   NP_596373 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)