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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hax1, HCLS1 associated X-1
Sequence ID:NM_011826
Entrez Gene ID:23897
Ensembl ID:ENSMUSG00000027944

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 89995456 - 89998686

NM_011826 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12548979937889799631
2553458979973589799825
3464528979993289800038
4535048980016889800219
5056928980130889801495
6939588980165989801924
95911178980244989802607

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1494110Full LengthBC098225HCLS1 associated X-1
3582652Full LengthBC006688HCLS1 associated X-1
9056226Full LengthBC147481HCLS1 associated X-1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011826 NP_035956 O35387  

Related Sequences

 
mRNAGenPeptSwissProt
AF023482 AAB81081 O35387
BC006688 AAH06688 O35387
BC098225 AAH98225 O35387
BC147481 AAI47482 B9EJR4
AF465243 AAL76987 Q8R5I5
AK002256 BAB21969 O35387
AK010633 BAB27077 O35387
AK088746 BAC40544 O35387
AK135138 BAE22434 Q3UXX9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hax1 NP_035956 H.sapiens HAX1 10456 Gene Info NP_006109 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)