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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Timp4, tissue inhibitor of metalloproteinase 4
Sequence ID:NM_080639
Entrez Gene ID:110595
Ensembl ID:ENSMUSG00000030317

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 E3|6 46.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 115246022 - 115251780

NM_080639 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1868115195633115196500
869993115197247115197371
9941108115199846115199960
11091206115200397115200494
12071416115201657115201866

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
875422Full LengthBC064046tissue inhibitor of metalloproteinase 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_542370  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_080639 NP_542370 Q8CAG3
Q9JHB3
TIMP

Related Sequences

 
mRNAGenPeptSwissProt
AF282730 AAF97239 Q3USH7
Q9JHB3
BC064046 AAH64046 Q3USH7
Q9JHB3
AY622856 AAT46411 Q6GXA6
AK038820 BAC30138 Q8CAG3
AK079347 BAC37616 Q8C577
AK140367 BAE24355 Q3USH7
Q9JHB3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Timp4 NP_542370 R.norvegicus Timp4 680130   NP_001102863 97
H.sapiens TIMP4 7079 Gene Info NP_003247 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta